SNP Detail For rs6867983
1.Mapping Information
Human SNP ID rs6867983
Human chromosome chr5
Human SNP position 56558326
Pig chromosome chr16
Pig SNP position 37885922
2.Annotation Information
PubMed ID20864672
JournalArterioscler Thromb Vasc Biol
Linkwww.ncbi.nlm.nih.gov/pubmed/20864672
StudyGenetic variants influencing circulating lipid levels and risk of coronary artery disease.
Disease/TraitTriglycerides
Initial sampleup to 17,723 European ancestry individuals
Replication sampleup to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals
Region5q11.2
Chromosome idchr5
Chromosome position56558326
Reported geneC5orf35
Mapped geneLOC101928448
Upstream gene id
Downstream gene id
SNP gene ids101928448
Upstream gene distance
Downstream gene distance
SNP risk allelers6867983-T
SNPsrs6867983
Merged0
SNP id current6867983
Contextintron_variant
Intergenic0
Allele frequency0.12
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta0.02
%95 Ci[0.01-0.03] unit increase
PlatformAffymetrix, Illumina, Perlegen [2155369] (imputed)
CNVN
Mapped traittriglyceride measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004530
Study accessionGCST000809
PubMed ID23966867
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23966867
StudyGenome-wide association of body fat distribution in African ancestry populations suggests new loci.
Disease/TraitWaist circumference
Initial sampleUp to 23,564 African American individuals
Replication sampleUp to 10,027 African American individuals
Region5q11.2
Chromosome idchr5
Chromosome position56558326
Reported geneMAP3K1
Mapped geneLOC101928448
Upstream gene id
Downstream gene id
SNP gene ids101928448
Upstream gene distance
Downstream gene distance
SNP risk allelers6867983-T
SNPsrs6867983
Merged0
SNP id current6867983
Contextintron_variant
Intergenic0
Allele frequency0.24
P value0.0000001
Pvalue mlog7
P value text(men)
Or beta0.09
%95 Ci[0.051-0.129] unit decrease
PlatformAffymetrix, Illumina [3200000] (imputed)
CNVN
Mapped traitwaist circumference
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004342
Study accessionGCST002137