Human SNP ID | rs6867983 |
---|---|
Human chromosome | chr5 |
Human SNP position | 56558326 |
Pig chromosome | chr16 |
Pig SNP position | 37885922 |
PubMed ID | 20864672 |
---|---|
Journal | Arterioscler Thromb Vasc Biol |
Link | www.ncbi.nlm.nih.gov/pubmed/20864672 |
Study | Genetic variants influencing circulating lipid levels and risk of coronary artery disease. |
Disease/Trait | Triglycerides |
Initial sample | up to 17,723 European ancestry individuals |
Replication sample | up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals |
Region | 5q11.2 |
Chromosome id | chr5 |
Chromosome position | 56558326 |
Reported gene | C5orf35 |
Mapped gene | LOC101928448 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928448 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6867983-T |
SNPs | rs6867983 |
Merged | 0 |
SNP id current | 6867983 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.12 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 0.02 |
%95 Ci | [0.01-0.03] unit increase |
Platform | Affymetrix, Illumina, Perlegen [2155369] (imputed) |
CNV | N |
Mapped trait | triglyceride measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004530 |
Study accession | GCST000809 |
PubMed ID | 23966867 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23966867 |
Study | Genome-wide association of body fat distribution in African ancestry populations suggests new loci. |
Disease/Trait | Waist circumference |
Initial sample | Up to 23,564 African American individuals |
Replication sample | Up to 10,027 African American individuals |
Region | 5q11.2 |
Chromosome id | chr5 |
Chromosome position | 56558326 |
Reported gene | MAP3K1 |
Mapped gene | LOC101928448 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928448 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6867983-T |
SNPs | rs6867983 |
Merged | 0 |
SNP id current | 6867983 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.24 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | (men) |
Or beta | 0.09 |
%95 Ci | [0.051-0.129] unit decrease |
Platform | Affymetrix, Illumina [3200000] (imputed) |
CNV | N |
Mapped trait | waist circumference |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004342 |
Study accession | GCST002137 |