SNP Detail For rs6859667
1.Mapping Information
Human SNP ID rs6859667
Human chromosome chr5
Human SNP position 79449219
Pig chromosome chr2
Pig SNP position 89989304
2.Annotation Information
PubMed ID25343990
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25343990
StudyGenome-wide association study of selenium concentrations.
Disease/TraitToenail selenium levels
Initial sample4,162 European ancestry individuals
Replication sampleNA
Region5q14.1
Chromosome idchr5
Chromosome position79449219
Reported geneJMY, HOMER1
Mapped geneHOMER1
Upstream gene id
Downstream gene id
SNP gene ids9456
Upstream gene distance
Downstream gene distance
SNP risk allelers6859667-T
SNPsrs6859667
Merged0
SNP id current6859667
Contextintron_variant
Intergenic0
Allele frequency0.96
P value0.0000001
Pvalue mlog7
P value text
Or beta0.045
%95 Ci[0.029-0.061] unit decrease
PlatformAffymetrix, Illumina [2378986] (imputed)
CNVN
Mapped traitselenium measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006331
Study accessionGCST002671
PubMed ID25343990
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25343990
StudyGenome-wide association study of selenium concentrations.
Disease/TraitBlood and toenail selenium levels
Initial sample9,639 European ancestry individuals
Replication sampleNA
Region5q14.1
Chromosome idchr5
Chromosome position79449219
Reported geneHOMER1, JMY
Mapped geneHOMER1
Upstream gene id
Downstream gene id
SNP gene ids9456
Upstream gene distance
Downstream gene distance
SNP risk allelers6859667-T
SNPsrs6859667
Merged0
SNP id current6859667
Contextintron_variant
Intergenic0
Allele frequency0.96
P value0.000000000004
Pvalue mlog11.397940008672
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2379663] (imputed)
CNVN
Mapped traitselenium measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006331
Study accessionGCST002670