SNP Detail For rs6855885
1.Mapping Information
Human SNP ID rs6855885
Human chromosome chr4
Human SNP position 91117856
Pig chromosome chr8
Pig SNP position 137219458
2.Annotation Information
PubMed ID25192705
JournalCancer Epidemiol Biomarkers Prev
Linkwww.ncbi.nlm.nih.gov/pubmed/25192705
StudyNo evidence of gene-calcium interactions from genome-wide analysis of colorectal cancer risk.
Disease/TraitColorectal cancer (calcium intake interaction)
Initial sample9,006 European ancestry cases, 9,503 European ancestry controls
Replication sampleNA
Region4q22.1
Chromosome idchr4
Chromosome position91117856
Reported geneFAM190A
Mapped geneCCSER1
Upstream gene id
Downstream gene id
SNP gene ids401145
Upstream gene distance
Downstream gene distance
SNP risk allelers6855885-A
SNPsrs6855885
Merged0
SNP id current6855885
Contextintron_variant
Intergenic0
Allele frequency0.5
P value0.000002
Pvalue mlog5.69897000433601
P value text(Dietary calcium intake)
Or beta1.11
%95 Ci[1.06-1.16]
PlatformNR [~ 2700000] (imputed)
CNVN
Mapped traitcalcium intake measurement, colorectal cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006521, http://www.ebi.ac.uk/efo/EFO_0005842
Study accessionGCST002596