Human SNP ID | rs6855885 |
---|---|
Human chromosome | chr4 |
Human SNP position | 91117856 |
Pig chromosome | chr8 |
Pig SNP position | 137219458 |
PubMed ID | 25192705 |
---|---|
Journal | Cancer Epidemiol Biomarkers Prev |
Link | www.ncbi.nlm.nih.gov/pubmed/25192705 |
Study | No evidence of gene-calcium interactions from genome-wide analysis of colorectal cancer risk. |
Disease/Trait | Colorectal cancer (calcium intake interaction) |
Initial sample | 9,006 European ancestry cases, 9,503 European ancestry controls |
Replication sample | NA |
Region | 4q22.1 |
Chromosome id | chr4 |
Chromosome position | 91117856 |
Reported gene | FAM190A |
Mapped gene | CCSER1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 401145 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6855885-A |
SNPs | rs6855885 |
Merged | 0 |
SNP id current | 6855885 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.5 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (Dietary calcium intake) |
Or beta | 1.11 |
%95 Ci | [1.06-1.16] |
Platform | NR [~ 2700000] (imputed) |
CNV | N |
Mapped trait | calcium intake measurement, colorectal cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006521, http://www.ebi.ac.uk/efo/EFO_0005842 |
Study accession | GCST002596 |