SNP Detail For rs6854292
1.Mapping Information
Human SNP ID rs6854292
Human chromosome chr4
Human SNP position 89273009
Pig chromosome chr8
Pig SNP position 139310317
2.Annotation Information
PubMed ID25646338
JournalAm J Clin Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/25646338
StudyGenetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.
Disease/TraitTrans fatty acid levels
Initial sample8,013 European ancestry individuals
Replication sample1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals
Region4q22.1
Chromosome idchr4
Chromosome position89273009
Reported geneNR
Mapped geneGPRIN3
Upstream gene id
Downstream gene id
SNP gene ids285513
Upstream gene distance
Downstream gene distance
SNP risk allelers6854292-A
SNPsrs6854292
Merged0
SNP id current6854292
Contextintron_variant
Intergenic0
Allele frequency0.8525
P value0.000002
Pvalue mlog5.69897000433601
P value text(Trans/cis-18:2, EA)
Or beta0.0067
%95 Ci[0.004-0.0094] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traittrans/cis-18:2 fatty acid measurement, trans fatty acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006825, http://www.ebi.ac.uk/efo/EFO_0006821
Study accessionGCST002721