Human SNP ID | rs6854292 |
---|---|
Human chromosome | chr4 |
Human SNP position | 89273009 |
Pig chromosome | chr8 |
Pig SNP position | 139310317 |
PubMed ID | 25646338 |
---|---|
Journal | Am J Clin Nutr |
Link | www.ncbi.nlm.nih.gov/pubmed/25646338 |
Study | Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium. |
Disease/Trait | Trans fatty acid levels |
Initial sample | 8,013 European ancestry individuals |
Replication sample | 1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals |
Region | 4q22.1 |
Chromosome id | chr4 |
Chromosome position | 89273009 |
Reported gene | NR |
Mapped gene | GPRIN3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 285513 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6854292-A |
SNPs | rs6854292 |
Merged | 0 |
SNP id current | 6854292 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.8525 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (Trans/cis-18:2, EA) |
Or beta | 0.0067 |
%95 Ci | [0.004-0.0094] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | trans/cis-18:2 fatty acid measurement, trans fatty acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006825, http://www.ebi.ac.uk/efo/EFO_0006821 |
Study accession | GCST002721 |