Human SNP ID | rs684232 |
---|---|
Human chromosome | chr17 |
Human SNP position | 715725 |
Pig chromosome | chr12 |
Pig SNP position | 49308265 |
PubMed ID | 23535732 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23535732 |
Study | Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. |
Disease/Trait | Prostate cancer |
Initial sample | 11,085 European ancestry cases, 11,463 European ancestry controls |
Replication sample | 19,662 European ancestry cases, 19,715 European ancestry controls |
Region | 17p13.3 |
Chromosome id | chr17 |
Chromosome position | 715725 |
Reported gene | DBIL5P, FAM57A, GEMIN4, GLOD4, NXN, RNMTL1, VPS53 |
Mapped gene | VPS53 - FAM57A |
Upstream gene id | 55275 |
Downstream gene id | 79850 |
SNP gene ids | |
Upstream gene distance | 869 |
Downstream gene distance | 16882 |
SNP risk allele | rs684232-G |
SNPs | rs684232 |
Merged | 0 |
SNP id current | 684232 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.36 |
P value | 0.000000000000005 |
Pvalue mlog | 14.3010299956639 |
P value text | |
Or beta | 1.1 |
%95 Ci | [1.07-1.14] |
Platform | Illumina [~ 2600000] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001942 |