SNP Detail For rs684232
1.Mapping Information
Human SNP ID rs684232
Human chromosome chr17
Human SNP position 715725
Pig chromosome chr12
Pig SNP position 49308265
2.Annotation Information
PubMed ID23535732
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23535732
StudyIdentification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.
Disease/TraitProstate cancer
Initial sample11,085 European ancestry cases, 11,463 European ancestry controls
Replication sample19,662 European ancestry cases, 19,715 European ancestry controls
Region17p13.3
Chromosome idchr17
Chromosome position715725
Reported geneDBIL5P, FAM57A, GEMIN4, GLOD4, NXN, RNMTL1, VPS53
Mapped geneVPS53 - FAM57A
Upstream gene id55275
Downstream gene id79850
SNP gene ids
Upstream gene distance869
Downstream gene distance16882
SNP risk allelers684232-G
SNPsrs684232
Merged0
SNP id current684232
Contextintron_variant
Intergenic1
Allele frequency0.36
P value0.000000000000005
Pvalue mlog14.3010299956639
P value text
Or beta1.1
%95 Ci[1.07-1.14]
PlatformIllumina [~ 2600000] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001942