SNP Detail For rs6836899
1.Mapping Information
Human SNP ID rs6836899
Human chromosome chr4
Human SNP position 187699229
Pig chromosome chr17
Pig SNP position 8498344
2.Annotation Information
PubMed ID25646338
JournalAm J Clin Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/25646338
StudyGenetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.
Disease/TraitTrans fatty acid levels
Initial sample8,013 European ancestry individuals
Replication sample1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals
Region4q35.2
Chromosome idchr4
Chromosome position187699229
Reported geneNR
Mapped geneLOC105377603
Upstream gene id
Downstream gene id
SNP gene ids105377603
Upstream gene distance
Downstream gene distance
SNP risk allelers6836899-T
SNPsrs6836899
Merged0
SNP id current6836899
Contextintergenic_variant
Intergenic0
Allele frequency0.0857
P value0.000003
Pvalue mlog5.52287874528033
P value text(Trans/trans-18:2, EA)
Or beta0.0022
%95 Ci[0.0012-0.0032] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traittrans fatty acid measurement, trans/trans-18:2 fatty acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006821, http://www.ebi.ac.uk/efo/EFO_0006826
Study accessionGCST002721