SNP Detail For rs6835704
1.Mapping Information
Human SNP ID rs6835704
Human chromosome chr4
Human SNP position 121222509
Pig chromosome chr8
Pig SNP position 110279158
2.Annotation Information
PubMed ID23468962
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23468962
StudyA genome-wide scan for breast cancer risk haplotypes among African American women.
Disease/TraitBreast cancer
Initial sample3,016 African American cases, 2,745 African American controls
Replication sampleNA
Region4q27
Chromosome idchr4;4
Chromosome position121222509;121200339
Reported gene
Mapped geneTNIP3; TNIP3
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers6835704-?; rs17435444-?
SNPsrs6835704; rs17435444
Merged0
SNP id current
Contextintron_variant; intron_variant
Intergenic
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta
%95 Ci
PlatformIllumina [1006480]
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST001879