SNP Detail For rs6828740
1.Mapping Information
Human SNP ID rs6828740
Human chromosome chr4
Human SNP position 117413463
Pig chromosome chr8
Pig SNP position 113774369
2.Annotation Information
PubMed ID24487271
JournalInflamm Bowel Dis
Linkwww.ncbi.nlm.nih.gov/pubmed/24487271
StudyClinical, serologic, and genetic factors associated with pyoderma gangrenosum and erythema nodosum in inflammatory bowel disease patients.
Disease/TraitErythema nodosum in inflammatory bowel disease
Initial sample103 European ancestry cases, 5,653 European ancestry controls
Replication sampleNA
Region4q26
Chromosome idchr4
Chromosome position117413463
Reported geneintergenic
Mapped geneLOC105377390 - LINC01378
Upstream gene id105377390
Downstream gene id103689918
SNP gene ids
Upstream gene distance24323
Downstream gene distance14935
SNP risk allelers6828740-C
SNPsrs6828740
Merged0
SNP id current6828740
Contextnon_coding_transcript_exon_variant
Intergenic1
Allele frequencyNR
P value0.00000005
Pvalue mlog7.30102999566398
P value text
Or beta4.14
%95 Ci[2.50-6.90]
PlatformIllumina [2017629] (imputed)
CNVN
Mapped traiterythema nodosum, inflammatory bowel disease
Mapped trait URIhttp://purl.obolibrary.org/obo/HP_0012219, http://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST002380