Human SNP ID | rs6828740 |
---|---|
Human chromosome | chr4 |
Human SNP position | 117413463 |
Pig chromosome | chr8 |
Pig SNP position | 113774369 |
PubMed ID | 24487271 |
---|---|
Journal | Inflamm Bowel Dis |
Link | www.ncbi.nlm.nih.gov/pubmed/24487271 |
Study | Clinical, serologic, and genetic factors associated with pyoderma gangrenosum and erythema nodosum in inflammatory bowel disease patients. |
Disease/Trait | Erythema nodosum in inflammatory bowel disease |
Initial sample | 103 European ancestry cases, 5,653 European ancestry controls |
Replication sample | NA |
Region | 4q26 |
Chromosome id | chr4 |
Chromosome position | 117413463 |
Reported gene | intergenic |
Mapped gene | LOC105377390 - LINC01378 |
Upstream gene id | 105377390 |
Downstream gene id | 103689918 |
SNP gene ids | |
Upstream gene distance | 24323 |
Downstream gene distance | 14935 |
SNP risk allele | rs6828740-C |
SNPs | rs6828740 |
Merged | 0 |
SNP id current | 6828740 |
Context | non_coding_transcript_exon_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.00000005 |
Pvalue mlog | 7.30102999566398 |
P value text | |
Or beta | 4.14 |
%95 Ci | [2.50-6.90] |
Platform | Illumina [2017629] (imputed) |
CNV | N |
Mapped trait | erythema nodosum, inflammatory bowel disease |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0012219, http://www.ebi.ac.uk/efo/EFO_0003767 |
Study accession | GCST002380 |