Human SNP ID | rs6812849 |
---|---|
Human chromosome | chr4 |
Human SNP position | 165951384 |
Pig chromosome | chr8 |
Pig SNP position | 44939087 |
PubMed ID | 23726511 |
---|---|
Journal | Biol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/23726511 |
Study | Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder. |
Disease/Trait | Post-traumatic stress disorder (asjusted for relatedness) |
Initial sample | up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls |
Replication sample | NA |
Region | 4q32.3 |
Chromosome id | chr4 |
Chromosome position | 165951384 |
Reported gene | TLL1 |
Mapped gene | TLL1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 7092 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6812849-? |
SNPs | rs6812849 |
Merged | 0 |
SNP id current | 6812849 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | (Whole cohort; EA) |
Or beta | |
%95 Ci | |
Platform | Illumina [up to 871502] |
CNV | N |
Mapped trait | post-traumatic stress disorder |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001358 |
Study accession | GCST002037 |
PubMed ID | 23726511 |
Journal | Biol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/23726511 |
Study | Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder. |
Disease/Trait | Post-traumatic stress disorder (asjusted for relatedness) |
Initial sample | up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls |
Replication sample | NA |
Region | 4q32.3 |
Chromosome id | chr4 |
Chromosome position | 165951384 |
Reported gene | TLL1 |
Mapped gene | TLL1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 7092 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6812849-? |
SNPs | rs6812849 |
Merged | 0 |
SNP id current | 6812849 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000005 |
Pvalue mlog | 6.30102999566398 |
P value text | (Trauma exposed controls; EA) |
Or beta | |
%95 Ci | |
Platform | Illumina [up to 871502] |
CNV | N |
Mapped trait | post-traumatic stress disorder |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001358 |
Study accession | GCST002037 |
PubMed ID | 23726511 |
Journal | Biol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/23726511 |
Study | Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder. |
Disease/Trait | Post-traumatic stress disorder |
Initial sample | 300 European ancestry cases, up to 1,538 European ancestry controls, 444 African American cases, up to 2,936 African American controls |
Replication sample | 207 European ancestry cases, up to 1,692 European ancestry controls, 89 African American cases, up to 655 African American controls |
Region | 4q32.3 |
Chromosome id | chr4 |
Chromosome position | 165951384 |
Reported gene | TLL1 |
Mapped gene | TLL1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 7092 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6812849-? |
SNPs | rs6812849 |
Merged | 0 |
SNP id current | 6812849 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000000003 |
Pvalue mlog | 8.52287874528033 |
P value text | (Whole cohort; EA) |
Or beta | |
%95 Ci | |
Platform | Illumina [up to 871502] |
CNV | N |
Mapped trait | post-traumatic stress disorder |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001358 |
Study accession | GCST002038 |
PubMed ID | 23726511 |
Journal | Biol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/23726511 |
Study | Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder. |
Disease/Trait | Post-traumatic stress disorder |
Initial sample | 300 European ancestry cases, up to 1,538 European ancestry controls, 444 African American cases, up to 2,936 African American controls |
Replication sample | 207 European ancestry cases, up to 1,692 European ancestry controls, 89 African American cases, up to 655 African American controls |
Region | 4q32.3 |
Chromosome id | chr4 |
Chromosome position | 165951384 |
Reported gene | TLL1 |
Mapped gene | TLL1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 7092 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6812849-? |
SNPs | rs6812849 |
Merged | 0 |
SNP id current | 6812849 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (Trauma Exposed controls; EA) |
Or beta | |
%95 Ci | |
Platform | Illumina [up to 871502] |
CNV | N |
Mapped trait | post-traumatic stress disorder |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001358 |
Study accession | GCST002038 |