SNP Detail For rs68080462
1.Mapping Information
Human SNP ID rs68080462
Human chromosome chr3
Human SNP position 18665014
Pig chromosome chr13
Pig SNP position 6534136
2.Annotation Information
PubMed ID25574825
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25574825
StudyGenome-wide Comparative Analysis of Atopic Dermatitis and Psoriasis Gives Insight into Opposing Genetic Mechanisms.
Disease/TraitInflammatory skin disease
Initial sample2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls
Replication sampleNA
Region3p24.3
Chromosome idchr3
Chromosome position18665014
Reported geneAC144521.1
Mapped geneLOC101927805 - LOC105376976
Upstream gene id101927805
Downstream gene id105376976
SNP gene ids
Upstream gene distance57827
Downstream gene distance80963
SNP risk allelers68080462-?
SNPsrs68080462
Merged0
SNP id current68080462
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.00000003
Pvalue mlog7.52287874528033
P value text(Psoriasis)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 5200000]
CNVN
Mapped traitpsoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST002740