SNP Detail For rs6806253
1.Mapping Information
Human SNP ID rs6806253
Human chromosome chr3
Human SNP position 128563854
Pig chromosome chr13
Pig SNP position 79545627
2.Annotation Information
PubMed ID23470693
JournalJ Dent Res
Linkwww.ncbi.nlm.nih.gov/pubmed/23470693
StudyGenome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.
Disease/TraitPit-and-Fissure caries
Initial sample996 European ancestry individuals
Replication sample
Region3q21.3
Chromosome idchr3
Chromosome position128563854
Reported geneNR
Mapped geneLOC90246 - LINC01565
Upstream gene id90246
Downstream gene id23434
SNP gene ids
Upstream gene distance53259
Downstream gene distance8146
SNP risk allelers6806253-A
SNPsrs6806253
Merged0
SNP id current6806253
Contextintergenic_variant
Intergenic1
Allele frequency0.8295
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta1.5595
%95 Ci[NR] unit decrease
PlatformIllumina [1200000] (imputed)
CNVN
Mapped traitpit and fissure surface dental caries
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006338
Study accessionGCST001897