Human SNP ID | rs6806253 |
---|---|
Human chromosome | chr3 |
Human SNP position | 128563854 |
Pig chromosome | chr13 |
Pig SNP position | 79545627 |
PubMed ID | 23470693 |
---|---|
Journal | J Dent Res |
Link | www.ncbi.nlm.nih.gov/pubmed/23470693 |
Study | Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition. |
Disease/Trait | Pit-and-Fissure caries |
Initial sample | 996 European ancestry individuals |
Replication sample | |
Region | 3q21.3 |
Chromosome id | chr3 |
Chromosome position | 128563854 |
Reported gene | NR |
Mapped gene | LOC90246 - LINC01565 |
Upstream gene id | 90246 |
Downstream gene id | 23434 |
SNP gene ids | |
Upstream gene distance | 53259 |
Downstream gene distance | 8146 |
SNP risk allele | rs6806253-A |
SNPs | rs6806253 |
Merged | 0 |
SNP id current | 6806253 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.8295 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 1.5595 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [1200000] (imputed) |
CNV | N |
Mapped trait | pit and fissure surface dental caries |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006338 |
Study accession | GCST001897 |