SNP Detail For rs6800541
1.Mapping Information
Human SNP ID rs6800541
Human chromosome chr3
Human SNP position 38733341
Pig chromosome chr13
Pig SNP position 25736917
2.Annotation Information
PubMed ID21041692
JournalCirculation
Linkwww.ncbi.nlm.nih.gov/pubmed/21041692
StudyIdentification of genomic predictors of atrioventricular conduction: using electronic medical records as a tool for genome science.
Disease/TraitAtrioventricular conduction
Initial sample2,334 European ancestry individuals
Replication sampleNA
Region3p22.2
Chromosome idchr3
Chromosome position38733341
Reported geneSCN10A
Mapped geneSCN10A
Upstream gene id
Downstream gene id
SNP gene ids6336
Upstream gene distance
Downstream gene distance
SNP risk allelers6800541-C
SNPsrs6800541
Merged0
SNP id current6800541
Contextintron_variant
Intergenic0
Allele frequency0.41
P value0.0000005
Pvalue mlog6.30102999566398
P value text
Or beta2.6
%95 Ci[1.62-3.70] ms increase
PlatformIllumina [514999]
CNVN
Mapped traitheart function measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004311
Study accessionGCST000852
PubMed ID20062060
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20062060
StudyGenome-wide association study of PR interval.
Disease/TraitPR interval
Initial sample28,517 European ancestry individuals
Replication sampleNA
Region3p22.2
Chromosome idchr3
Chromosome position38733341
Reported geneSCN10A
Mapped geneSCN10A
Upstream gene id
Downstream gene id
SNP gene ids6336
Upstream gene distance
Downstream gene distance
SNP risk allelers6800541-C
SNPsrs6800541
Merged0
SNP id current6800541
Contextintron_variant
Intergenic0
Allele frequency0.4
P value2E-74
Pvalue mlog73.698970004336
P value text
Or beta3.77
%95 Ci[3.37-4.17] ms increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitPR interval
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004462
Study accessionGCST000562