Human SNP ID | rs6800541 |
---|---|
Human chromosome | chr3 |
Human SNP position | 38733341 |
Pig chromosome | chr13 |
Pig SNP position | 25736917 |
PubMed ID | 21041692 |
---|---|
Journal | Circulation |
Link | www.ncbi.nlm.nih.gov/pubmed/21041692 |
Study | Identification of genomic predictors of atrioventricular conduction: using electronic medical records as a tool for genome science. |
Disease/Trait | Atrioventricular conduction |
Initial sample | 2,334 European ancestry individuals |
Replication sample | NA |
Region | 3p22.2 |
Chromosome id | chr3 |
Chromosome position | 38733341 |
Reported gene | SCN10A |
Mapped gene | SCN10A |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6336 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6800541-C |
SNPs | rs6800541 |
Merged | 0 |
SNP id current | 6800541 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.41 |
P value | 0.0000005 |
Pvalue mlog | 6.30102999566398 |
P value text | |
Or beta | 2.6 |
%95 Ci | [1.62-3.70] ms increase |
Platform | Illumina [514999] |
CNV | N |
Mapped trait | heart function measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004311 |
Study accession | GCST000852 |
PubMed ID | 20062060 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20062060 |
Study | Genome-wide association study of PR interval. |
Disease/Trait | PR interval |
Initial sample | 28,517 European ancestry individuals |
Replication sample | NA |
Region | 3p22.2 |
Chromosome id | chr3 |
Chromosome position | 38733341 |
Reported gene | SCN10A |
Mapped gene | SCN10A |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6336 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6800541-C |
SNPs | rs6800541 |
Merged | 0 |
SNP id current | 6800541 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.4 |
P value | 2E-74 |
Pvalue mlog | 73.698970004336 |
P value text | |
Or beta | 3.77 |
%95 Ci | [3.37-4.17] ms increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | PR interval |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004462 |
Study accession | GCST000562 |