SNP Detail For rs6799788
1.Mapping Information
Human SNP ID rs6799788
Human chromosome chr3
Human SNP position 159926508
Pig chromosome chr13
Pig SNP position 107998893
2.Annotation Information
PubMed ID23377640
JournalAm J Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23377640
StudyCommon genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.
Disease/TraitMajor depressive disorder
Initial sampleUp to 2,256 European ancestry cases
Replication sampleNA
Region3q25.33
Chromosome idchr3
Chromosome position159926508
Reported geneIL12A, SCHIP1
Mapped geneIL12A-AS1
Upstream gene id
Downstream gene id
SNP gene ids101928376
Upstream gene distance
Downstream gene distance
SNP risk allelers6799788-G
SNPsrs6799788
Merged0
SNP id current6799788
Contextintron_variant
Intergenic0
Allele frequency0.2476976
P value0.000001
Pvalue mlog6
P value text(partial response - SSRI treated - 2 weeks)
Or beta1.6268
%95 Ci[1.43-1.82]
PlatformAffymetrix, Illumina [1200000] (imputed)
CNVN
Mapped traitunipolar depression
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003761
Study accessionGCST001850