SNP Detail For rs679582
1.Mapping Information
Human SNP ID rs679582
Human chromosome chr6
Human SNP position 139510043
Pig chromosome chr1
Pig SNP position 28176743
2.Annotation Information
PubMed ID23720494
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23720494
StudyGenome-wide association study identifies loci affecting blood copper, selenium and zinc.
Disease/TraitBlood trace element (Se levels)
Initial sample5477 European ancestry individuals
Replication sampleNA
Region6q24.1
Chromosome idchr6
Chromosome position139510043
Reported geneCITED2
Mapped geneLOC645434 - LOC105378023
Upstream gene id645434
Downstream gene id105378023
SNP gene ids
Upstream gene distance35447
Downstream gene distance15461
SNP risk allelers679582-?
SNPsrs679582
Merged0
SNP id current679582
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta0.095
%95 Ci[0.056-0.134] unit increase
PlatformIllumina [> 2500000] (imputed)
CNVN
Mapped traitserum selenium measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005266
Study accessionGCST002039