Human SNP ID | rs679582 |
---|---|
Human chromosome | chr6 |
Human SNP position | 139510043 |
Pig chromosome | chr1 |
Pig SNP position | 28176743 |
PubMed ID | 23720494 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23720494 |
Study | Genome-wide association study identifies loci affecting blood copper, selenium and zinc. |
Disease/Trait | Blood trace element (Se levels) |
Initial sample | 5477 European ancestry individuals |
Replication sample | NA |
Region | 6q24.1 |
Chromosome id | chr6 |
Chromosome position | 139510043 |
Reported gene | CITED2 |
Mapped gene | LOC645434 - LOC105378023 |
Upstream gene id | 645434 |
Downstream gene id | 105378023 |
SNP gene ids | |
Upstream gene distance | 35447 |
Downstream gene distance | 15461 |
SNP risk allele | rs679582-? |
SNPs | rs679582 |
Merged | 0 |
SNP id current | 679582 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 0.095 |
%95 Ci | [0.056-0.134] unit increase |
Platform | Illumina [> 2500000] (imputed) |
CNV | N |
Mapped trait | serum selenium measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005266 |
Study accession | GCST002039 |