SNP Detail For rs6789327
1.Mapping Information
Human SNP ID rs6789327
Human chromosome chr3
Human SNP position 189395472
Pig chromosome chr13
Pig SNP position 136112725
2.Annotation Information
PubMed ID24144296
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24144296
StudyNine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.
Disease/TraitAxial length
Initial sample12,531 European ancestry individuals
Replication sample8,216 Asian ancestry individuals
Region3q28
Chromosome idchr3
Chromosome position189395472
Reported geneTPRG1
Mapped geneTPRG1 - LOC105374270
Upstream gene id285386
Downstream gene id105374270
SNP gene ids
Upstream gene distance71990
Downstream gene distance66409
SNP risk allelers6789327-A
SNPsrs6789327
Merged0
SNP id current6789327
Contextintergenic_variant
Intergenic1
Allele frequency0.0012
P value0.0000003
Pvalue mlog6.52287874528033
P value text
Or beta3.7647
%95 Ci[2.33-5.2] unit increase
PlatformIllumina [2500000] (imputed)
CNVN
Mapped traitaxial length measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005318
Study accessionGCST002115