Human SNP ID | rs6789327 |
---|---|
Human chromosome | chr3 |
Human SNP position | 189395472 |
Pig chromosome | chr13 |
Pig SNP position | 136112725 |
PubMed ID | 24144296 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24144296 |
Study | Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error. |
Disease/Trait | Axial length |
Initial sample | 12,531 European ancestry individuals |
Replication sample | 8,216 Asian ancestry individuals |
Region | 3q28 |
Chromosome id | chr3 |
Chromosome position | 189395472 |
Reported gene | TPRG1 |
Mapped gene | TPRG1 - LOC105374270 |
Upstream gene id | 285386 |
Downstream gene id | 105374270 |
SNP gene ids | |
Upstream gene distance | 71990 |
Downstream gene distance | 66409 |
SNP risk allele | rs6789327-A |
SNPs | rs6789327 |
Merged | 0 |
SNP id current | 6789327 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.0012 |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | |
Or beta | 3.7647 |
%95 Ci | [2.33-5.2] unit increase |
Platform | Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | axial length measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005318 |
Study accession | GCST002115 |