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SNP Detail For rs6787231
1.Mapping Information
| Human SNP ID | rs6787231 |
|---|---|
| Human chromosome | chr3 |
| Human SNP position | 20916318 |
| Pig chromosome | chr13 |
| Pig SNP position | 9056815 |
2.Annotation Information
| PubMed ID | 23382691 |
|---|---|
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 3p24.3 |
| Chromosome id | chr3 |
| Chromosome position | 20916318 |
| Reported gene | NR |
| Mapped gene | LOC101927829 - LOC105376987 |
| Upstream gene id | 101927829 |
| Downstream gene id | 105376987 |
| SNP gene ids | |
| Upstream gene distance | 565390 |
| Downstream gene distance | 124912 |
| SNP risk allele | rs6787231-C |
| SNPs | rs6787231 |
| Merged | 0 |
| SNP id current | 6787231 |
| Context | intron_variant |
| Intergenic | 1 |
| Allele frequency | 0.900662045838896 |
| P value | 0.000005 |
| Pvalue mlog | 5.30102999566398 |
| P value text | (IGP48) |
| Or beta | 0.2602 |
| %95 Ci | [0.15-0.37] unit decrease |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 3p24.3 |
| Chromosome id | chr3 |
| Chromosome position | 20916318 |
| Reported gene | NR |
| Mapped gene | LOC101927829 - LOC105376987 |
| Upstream gene id | 101927829 |
| Downstream gene id | 105376987 |
| SNP gene ids | |
| Upstream gene distance | 565390 |
| Downstream gene distance | 124912 |
| SNP risk allele | rs6787231-C |
| SNPs | rs6787231 |
| Merged | 0 |
| SNP id current | 6787231 |
| Context | intron_variant |
| Intergenic | 1 |
| Allele frequency | 0.900662045838896 |
| P value | 0.000005 |
| Pvalue mlog | 5.30102999566398 |
| P value text | (IGP8) |
| Or beta | 0.261 |
| %95 Ci | [0.15-0.37] unit decrease |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
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