SNP Detail For rs6782264
1.Mapping Information
Human SNP ID rs6782264
Human chromosome chr3
Human SNP position 168534516
Pig chromosome chr13
Pig SNP position 115925976
2.Annotation Information
PubMed ID24324551
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24324551
StudyGenome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
Disease/TraitPR interval in Tripanosoma cruzi seropositivity
Initial sample580 Brazilian ancestry individuals
Replication sampleNA
Region3q26.2
Chromosome idchr3
Chromosome position168534516
Reported geneNR
Mapped geneEGFEM1P
Upstream gene id
Downstream gene id
SNP gene ids93556
Upstream gene distance
Downstream gene distance
SNP risk allelers6782264-?
SNPsrs6782264
Merged0
SNP id current6782264
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta
%95 Ci
PlatformAffymetrix [5486770] (imputed)
CNVN
Mapped traitPR interval, Trypanosoma cruzi seropositivity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004462, http://www.ebi.ac.uk/efo/EFO_0005530
Study accessionGCST002279