Human SNP ID | rs6780569 |
---|---|
Human chromosome | chr3 |
Human SNP position | 23156993 |
Pig chromosome | chr13 |
Pig SNP position | 11293489 |
PubMed ID | 23945395 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23945395 |
Study | Genome-wide association study identifies three novel loci for type 2 diabetes. |
Disease/Trait | Type 2 diabetes |
Initial sample | 5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls |
Replication sample | 24,416 East Asian ancestry cases, 13,985 East Asian ancestry controls |
Region | 3p24.3 |
Chromosome id | chr3 |
Chromosome position | 23156993 |
Reported gene | UBE2E2 |
Mapped gene | RPL24P7 - UBE2E2-AS1 |
Upstream gene id | 100270963 |
Downstream gene id | 100505877 |
SNP gene ids | |
Upstream gene distance | 22126 |
Downstream gene distance | 38077 |
SNP risk allele | rs6780569-G |
SNPs | rs6780569 |
Merged | 0 |
SNP id current | 6780569 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.83 |
P value | 0.0000004 |
Pvalue mlog | 6.39794000867203 |
P value text | |
Or beta | 1.17 |
%95 Ci | [1.10-1.24] |
Platform | Illumina [6209637] (imputed) |
CNV | N |
Mapped trait | type II diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001360 |
Study accession | GCST002128 |