SNP Detail For rs6780569
1.Mapping Information
Human SNP ID rs6780569
Human chromosome chr3
Human SNP position 23156993
Pig chromosome chr13
Pig SNP position 11293489
2.Annotation Information
PubMed ID23945395
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23945395
StudyGenome-wide association study identifies three novel loci for type 2 diabetes.
Disease/TraitType 2 diabetes
Initial sample5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls
Replication sample24,416 East Asian ancestry cases, 13,985 East Asian ancestry controls
Region3p24.3
Chromosome idchr3
Chromosome position23156993
Reported geneUBE2E2
Mapped geneRPL24P7 - UBE2E2-AS1
Upstream gene id100270963
Downstream gene id100505877
SNP gene ids
Upstream gene distance22126
Downstream gene distance38077
SNP risk allelers6780569-G
SNPsrs6780569
Merged0
SNP id current6780569
Contextintergenic_variant
Intergenic1
Allele frequency0.83
P value0.0000004
Pvalue mlog6.39794000867203
P value text
Or beta1.17
%95 Ci[1.10-1.24]
PlatformIllumina [6209637] (imputed)
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST002128