SNP Detail For rs6778194
1.Mapping Information
Human SNP ID rs6778194
Human chromosome chr3
Human SNP position 153466867
Pig chromosome chr13
Pig SNP position 101588516
2.Annotation Information
PubMed ID22610502
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22610502
StudyGenome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.
Disease/TraitImmune reponse to smallpox (secreted IFN-alpha)
Initial sampleUp to 512 European ancestry individuals, up to 199 African American individuals
Replication sampleNA
Region3q25.2
Chromosome idchr3
Chromosome position153466867
Reported geneLOC152118
Mapped geneLOC105374165
Upstream gene id
Downstream gene id
SNP gene ids105374165
Upstream gene distance
Downstream gene distance
SNP risk allelers6778194-C
SNPsrs6778194
Merged0
SNP id current6778194
Contextintron_variant
Intergenic0
Allele frequency
P value0.000000002
Pvalue mlog8.69897000433601
P value text(AA)
Or beta
%95 Ci
PlatformIllumina [NR]
CNVN
Mapped traitresponse to vaccine, cytokine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004645, http://www.ebi.ac.uk/efo/EFO_0004873
Study accessionGCST001538