SNP Detail For rs6759556
1.Mapping Information
Human SNP ID rs6759556
Human chromosome chr2
Human SNP position 102135190
Pig chromosome chr3
Pig SNP position 54788137
2.Annotation Information
PubMed ID25378659
JournalJ Lipid Res
Linkwww.ncbi.nlm.nih.gov/pubmed/25378659
StudyGenetic Loci Associated with Circulating Levels of Very Long-Chain Saturated Fatty Acids.
Disease/TraitVery long-chain saturated fatty acid levels (fatty acid 20:0)
Initial sample10,129 European ancestry individuals
Replication sampleNA
Region2q12.1
Chromosome idchr2
Chromosome position102135190
Reported geneIL1R1
Mapped geneIL1R1
Upstream gene id
Downstream gene id
SNP gene ids3554
Upstream gene distance
Downstream gene distance
SNP risk allelers6759556-A
SNPsrs6759556
Merged0
SNP id current6759556
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta4.478
%95 Ci[NR] Z score decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitvery long-chain saturated fatty acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006796
Study accessionGCST002690