Human SNP ID | rs6758334 |
---|---|
Human chromosome | chr2 |
Human SNP position | 182257311 |
Pig chromosome | chr15 |
Pig SNP position | 96995821 |
PubMed ID | 21844884 |
---|---|
Journal | Pharmacogenomics J |
Link | www.ncbi.nlm.nih.gov/pubmed/21844884 |
Study | Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations |
Disease/Trait | Response to platinum-based chemotherapy (carboplatin) |
Initial sample | 176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines |
Replication sample | NA |
Region | 2q32.1 |
Chromosome id | chr2 |
Chromosome position | 182257311 |
Reported gene | PDE1A |
Mapped gene | PDE1A |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5136 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6758334-? |
SNPs | rs6758334 |
Merged | 0 |
SNP id current | 6758334 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | |
Or beta | |
%95 Ci | |
Platform | NR [~ 3000000] (imputed) |
CNV | N |
Mapped trait | response to carboplatin |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097328 |
Study accession | GCST001204 |