SNP Detail For rs6758334
1.Mapping Information
Human SNP ID rs6758334
Human chromosome chr2
Human SNP position 182257311
Pig chromosome chr15
Pig SNP position 96995821
2.Annotation Information
PubMed ID21844884
JournalPharmacogenomics J
Linkwww.ncbi.nlm.nih.gov/pubmed/21844884
StudyGenome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations
Disease/TraitResponse to platinum-based chemotherapy (carboplatin)
Initial sample176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines
Replication sampleNA
Region2q32.1
Chromosome idchr2
Chromosome position182257311
Reported genePDE1A
Mapped genePDE1A
Upstream gene id
Downstream gene id
SNP gene ids5136
Upstream gene distance
Downstream gene distance
SNP risk allelers6758334-?
SNPsrs6758334
Merged0
SNP id current6758334
Contextintron_variant
Intergenic0
Allele frequency
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta
%95 Ci
PlatformNR [~ 3000000] (imputed)
CNVN
Mapped traitresponse to carboplatin
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097328
Study accessionGCST001204