SNP Detail For rs6758290
1.Mapping Information
Human SNP ID rs6758290
Human chromosome chr2
Human SNP position 105248369
Pig chromosome chr3
Pig SNP position 51788911
2.Annotation Information
PubMed ID25231870
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25231870
StudyParent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.
Disease/TraitMenarche (age at onset)
Initial sampleUp to 182,413 European ancestry females
Replication sampleNA
Region2q12.1
Chromosome idchr2
Chromosome position105248369
Reported geneGPR45
Mapped geneGPR45 - TGFBRAP1
Upstream gene id11250
Downstream gene id9392
SNP gene ids
Upstream gene distance4902
Downstream gene distance1035
SNP risk allelers6758290-T
SNPsrs6758290
Merged0
SNP id current6758290
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.5
P value0.0000000000007
Pvalue mlog12.1549019599857
P value text
Or beta0.04
%95 Ci[0.03-0.05] unit increase
PlatformAffymetrix, Illumina [2441815] (imputed)
CNVN
Mapped traitage at menarche
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004703
Study accessionGCST002541