Human SNP ID | rs6758290 |
---|---|
Human chromosome | chr2 |
Human SNP position | 105248369 |
Pig chromosome | chr3 |
Pig SNP position | 51788911 |
PubMed ID | 25231870 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25231870 |
Study | Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche. |
Disease/Trait | Menarche (age at onset) |
Initial sample | Up to 182,413 European ancestry females |
Replication sample | NA |
Region | 2q12.1 |
Chromosome id | chr2 |
Chromosome position | 105248369 |
Reported gene | GPR45 |
Mapped gene | GPR45 - TGFBRAP1 |
Upstream gene id | 11250 |
Downstream gene id | 9392 |
SNP gene ids | |
Upstream gene distance | 4902 |
Downstream gene distance | 1035 |
SNP risk allele | rs6758290-T |
SNPs | rs6758290 |
Merged | 0 |
SNP id current | 6758290 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.5 |
P value | 0.0000000000007 |
Pvalue mlog | 12.1549019599857 |
P value text | |
Or beta | 0.04 |
%95 Ci | [0.03-0.05] unit increase |
Platform | Affymetrix, Illumina [2441815] (imputed) |
CNV | N |
Mapped trait | age at menarche |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004703 |
Study accession | GCST002541 |