SNP Detail For rs6754295
1.Mapping Information
Human SNP ID rs6754295
Human chromosome chr2
Human SNP position 20983311
Pig chromosome JH118994-1
Pig SNP position 74087
2.Annotation Information
PubMed ID19060911
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19060911
StudyLoci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.
Disease/TraitTriglycerides
Initial sample17,100 European ancestry individuals, 715 Orcadian individuals
Replication sampleNA
Region2p24.1
Chromosome idchr2
Chromosome position20983311
Reported geneAPOB
Mapped geneLOC101928271 - APOB
Upstream gene id101928271
Downstream gene id338
SNP gene ids
Upstream gene distance121650
Downstream gene distance15907
SNP risk allelers6754295-C
SNPsrs6754295
Merged0
SNP id current6754295
Contextintergenic_variant
Intergenic1
Allele frequency0.25
P value0.00000003
Pvalue mlog7.52287874528033
P value text
Or beta0.08
%95 Ci[NR] s.d. decrease
PlatformAffymetrix, Illumina [up to 600000]
CNVN
Mapped traittriglyceride measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004530
Study accessionGCST000289
PubMed ID19060911
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19060911
StudyLoci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.
Disease/TraitHDL cholesterol
Initial sample20,697 European ancestry individuals, 715 Orcadian individuals
Replication sampleNA
Region2p24.1
Chromosome idchr2
Chromosome position20983311
Reported geneAPOB
Mapped geneLOC101928271 - APOB
Upstream gene id101928271
Downstream gene id338
SNP gene ids
Upstream gene distance121650
Downstream gene distance15907
SNP risk allelers6754295-C
SNPsrs6754295
Merged0
SNP id current6754295
Contextintergenic_variant
Intergenic1
Allele frequency0.25
P value0.00000004
Pvalue mlog7.39794000867203
P value text
Or beta0.07
%95 Ci[NR] s.d. increase
PlatformAffymetrix, Illumina [up to 600000]
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST000288
PubMed ID19936222
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19936222
StudyForty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.
Disease/TraitLipid metabolism phenotypes
Initial sampleUp to 17,296 European ancestry female individuals
Replication sampleUp to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls
Region2p24.1
Chromosome idchr2
Chromosome position20983311
Reported geneAPOB
Mapped geneLOC101928271 - APOB
Upstream gene id101928271
Downstream gene id338
SNP gene ids
Upstream gene distance121650
Downstream gene distance15907
SNP risk allelers6754295-?
SNPsrs6754295
Merged0
SNP id current6754295
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value4E-47
Pvalue mlog46.397940008672
P value text(VLDL.small, fasting)
Or beta4.127
%95 Ci[NR] unit decrease
PlatformIllumina [335603]
CNVN
Mapped traitlipid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004529
Study accessionGCST000533