Human SNP ID | rs6754295 |
---|---|
Human chromosome | chr2 |
Human SNP position | 20983311 |
Pig chromosome | JH118994-1 |
Pig SNP position | 74087 |
PubMed ID | 19060911 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19060911 |
Study | Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts. |
Disease/Trait | Triglycerides |
Initial sample | 17,100 European ancestry individuals, 715 Orcadian individuals |
Replication sample | NA |
Region | 2p24.1 |
Chromosome id | chr2 |
Chromosome position | 20983311 |
Reported gene | APOB |
Mapped gene | LOC101928271 - APOB |
Upstream gene id | 101928271 |
Downstream gene id | 338 |
SNP gene ids | |
Upstream gene distance | 121650 |
Downstream gene distance | 15907 |
SNP risk allele | rs6754295-C |
SNPs | rs6754295 |
Merged | 0 |
SNP id current | 6754295 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.25 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | |
Or beta | 0.08 |
%95 Ci | [NR] s.d. decrease |
Platform | Affymetrix, Illumina [up to 600000] |
CNV | N |
Mapped trait | triglyceride measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004530 |
Study accession | GCST000289 |
PubMed ID | 19060911 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19060911 |
Study | Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts. |
Disease/Trait | HDL cholesterol |
Initial sample | 20,697 European ancestry individuals, 715 Orcadian individuals |
Replication sample | NA |
Region | 2p24.1 |
Chromosome id | chr2 |
Chromosome position | 20983311 |
Reported gene | APOB |
Mapped gene | LOC101928271 - APOB |
Upstream gene id | 101928271 |
Downstream gene id | 338 |
SNP gene ids | |
Upstream gene distance | 121650 |
Downstream gene distance | 15907 |
SNP risk allele | rs6754295-C |
SNPs | rs6754295 |
Merged | 0 |
SNP id current | 6754295 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.25 |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | |
Or beta | 0.07 |
%95 Ci | [NR] s.d. increase |
Platform | Affymetrix, Illumina [up to 600000] |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST000288 |
PubMed ID | 19936222 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19936222 |
Study | Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis. |
Disease/Trait | Lipid metabolism phenotypes |
Initial sample | Up to 17,296 European ancestry female individuals |
Replication sample | Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls |
Region | 2p24.1 |
Chromosome id | chr2 |
Chromosome position | 20983311 |
Reported gene | APOB |
Mapped gene | LOC101928271 - APOB |
Upstream gene id | 101928271 |
Downstream gene id | 338 |
SNP gene ids | |
Upstream gene distance | 121650 |
Downstream gene distance | 15907 |
SNP risk allele | rs6754295-? |
SNPs | rs6754295 |
Merged | 0 |
SNP id current | 6754295 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 4E-47 |
Pvalue mlog | 46.397940008672 |
P value text | (VLDL.small, fasting) |
Or beta | 4.127 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [335603] |
CNV | N |
Mapped trait | lipid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004529 |
Study accession | GCST000533 |