Human SNP ID | rs674313 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32610305 |
Pig chromosome | chr7 |
Pig SNP position | 29143134 |
PubMed ID | 21131588 |
---|---|
Journal | Blood |
Link | www.ncbi.nlm.nih.gov/pubmed/21131588 |
Study | Genome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL. |
Disease/Trait | Chronic lymphocytic leukemia |
Initial sample | 407 European ancestry cases, 296 European ancestry controls |
Replication sample | 252 European ancestry cases, 965 European ancestry controls |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32610305 |
Reported gene | HLA-DRB5 |
Mapped gene | HLA-DRB1 - HLA-DQA1 |
Upstream gene id | 3123 |
Downstream gene id | 3117 |
SNP gene ids | |
Upstream gene distance | 20469 |
Downstream gene distance | 27091 |
SNP risk allele | rs674313-T |
SNPs | rs674313 |
Merged | 0 |
SNP id current | 674313 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.26 |
P value | 0.000000007 |
Pvalue mlog | 8.15490195998574 |
P value text | |
Or beta | 1.69 |
%95 Ci | [1.41-2.01] |
Platform | Affymetrix [827777] |
CNV | N |
Mapped trait | chronic lymphocytic leukemia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000095 |
Study accession | GCST000906 |