SNP Detail For rs674313
1.Mapping Information
Human SNP ID rs674313
Human chromosome chr6
Human SNP position 32610305
Pig chromosome chr7
Pig SNP position 29143134
2.Annotation Information
PubMed ID21131588
JournalBlood
Linkwww.ncbi.nlm.nih.gov/pubmed/21131588
StudyGenome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL.
Disease/TraitChronic lymphocytic leukemia
Initial sample407 European ancestry cases, 296 European ancestry controls
Replication sample252 European ancestry cases, 965 European ancestry controls
Region6p21.32
Chromosome idchr6
Chromosome position32610305
Reported geneHLA-DRB5
Mapped geneHLA-DRB1 - HLA-DQA1
Upstream gene id3123
Downstream gene id3117
SNP gene ids
Upstream gene distance20469
Downstream gene distance27091
SNP risk allelers674313-T
SNPsrs674313
Merged0
SNP id current674313
Contextupstream_gene_variant
Intergenic1
Allele frequency0.26
P value0.000000007
Pvalue mlog8.15490195998574
P value text
Or beta1.69
%95 Ci[1.41-2.01]
PlatformAffymetrix [827777]
CNVN
Mapped traitchronic lymphocytic leukemia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000095
Study accessionGCST000906