SNP Detail For rs6738825
1.Mapping Information
Human SNP ID rs6738825
Human chromosome chr2
Human SNP position 198032171
Pig chromosome chr15
Pig SNP position 112892141
2.Annotation Information
PubMed ID21102463
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21102463
StudyGenome-wide meta-analysis increases to 71 the number of confirmed Crohn__s disease susceptibility loci.
Disease/TraitCrohn__s disease
Initial sample6,333 European ancestry cases, 15,056 European ancestry controls
Replication sample15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios
Region2q33.1
Chromosome idchr2
Chromosome position198032171
Reported genePLCL1
Mapped genePLCL1
Upstream gene id
Downstream gene id
SNP gene ids5334
Upstream gene distance
Downstream gene distance
SNP risk allelers6738825-A
SNPsrs6738825
Merged0
SNP id current6738825
Contextintron_variant
Intergenic0
Allele frequency0.473
P value0.000000004
Pvalue mlog8.39794000867203
P value text
Or beta1.06
%95 Ci[1.02-1.11]
PlatformAffymetrix, Illumina [953241] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST000879