SNP Detail For rs6738181
1.Mapping Information
Human SNP ID rs6738181
Human chromosome chr2
Human SNP position 204263298
Pig chromosome chr15
Pig SNP position 119063444
2.Annotation Information
PubMed ID22881374
JournalAnn Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22881374
StudyGenome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.
Disease/TraitAlzheimer__s disease (late onset)
Initial sample109 Amish cases, 689 Amish controls
Replication sampleNA
Region2q33.3
Chromosome idchr2
Chromosome position204263298
Reported geneintergenic
Mapped geneICOS - LOC105373845
Upstream gene id29851
Downstream gene id105373845
SNP gene ids
Upstream gene distance301719
Downstream gene distance210514
SNP risk allelers6738181-A
SNPsrs6738181
Merged0
SNP id current6738181
Contextintergenic_variant
Intergenic1
Allele frequency0.19
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta
%95 Ci
PlatformAffymetrix [614963]
CNVN
Mapped traitAlzheimers disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249
Study accessionGCST001658