Human SNP ID | rs6735786 |
---|---|
Human chromosome | chr2 |
Human SNP position | 103153780 |
Pig chromosome | chr3 |
Pig SNP position | 53523589 |
PubMed ID | 19079262 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19079262 |
Study | New sequence variants associated with bone mineral density. |
Disease/Trait | Bone mineral density (hip) |
Initial sample | 6,865 European ancestry individuals |
Replication sample | 8,510 European ancestry individuals |
Region | 2q12.1 |
Chromosome id | chr2 |
Chromosome position | 103153780 |
Reported gene | NR |
Mapped gene | LOC105373519 - LOC105373520 |
Upstream gene id | 105373519 |
Downstream gene id | 105373520 |
SNP gene ids | |
Upstream gene distance | 169260 |
Downstream gene distance | 658331 |
SNP risk allele | rs6735786-C |
SNPs | rs6735786 |
Merged | 0 |
SNP id current | 6735786 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.64 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 0.07 |
%95 Ci | [0.04-0.09] s.d. decrease |
Platform | Illumina [305051] |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST000297 |