Human SNP ID | rs6731443 |
---|---|
Human chromosome | chr2 |
Human SNP position | 227532850 |
Pig chromosome | chr15 |
Pig SNP position | 142758818 |
PubMed ID | 23984888 |
---|---|
Journal | BMC Med Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23984888 |
Study | ITGB5 and AGFG1 variants are associated with severity of airway responsiveness. |
Disease/Trait | Airway hyperresponsiveness |
Initial sample | 994 European ancestry asthma cases |
Replication sample | 650 European ancestry asthma cases, 3,354 European ancestry chronic obstructive pulmonary disease cases |
Region | 2q36.3 |
Chromosome id | chr2 |
Chromosome position | 227532850 |
Reported gene | ITGB5, AGFG1 |
Mapped gene | AGFG1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3267 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6731443-G |
SNPs | rs6731443 |
Merged | 0 |
SNP id current | 6731443 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.36 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 0.022 |
%95 Ci | [NR] unit decrease |
Platform | Affymetrix [2154322] (imputed) |
CNV | N |
Mapped trait | airway hyperresponsiveness |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005414 |
Study accession | GCST002152 |