SNP Detail For rs6731443
1.Mapping Information
Human SNP ID rs6731443
Human chromosome chr2
Human SNP position 227532850
Pig chromosome chr15
Pig SNP position 142758818
2.Annotation Information
PubMed ID23984888
JournalBMC Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23984888
StudyITGB5 and AGFG1 variants are associated with severity of airway responsiveness.
Disease/TraitAirway hyperresponsiveness
Initial sample994 European ancestry asthma cases
Replication sample650 European ancestry asthma cases, 3,354 European ancestry chronic obstructive pulmonary disease cases
Region2q36.3
Chromosome idchr2
Chromosome position227532850
Reported geneITGB5, AGFG1
Mapped geneAGFG1
Upstream gene id
Downstream gene id
SNP gene ids3267
Upstream gene distance
Downstream gene distance
SNP risk allelers6731443-G
SNPsrs6731443
Merged0
SNP id current6731443
Contextintron_variant
Intergenic0
Allele frequency0.36
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.022
%95 Ci[NR] unit decrease
PlatformAffymetrix [2154322] (imputed)
CNVN
Mapped traitairway hyperresponsiveness
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005414
Study accessionGCST002152