SNP Detail For rs6731302
1.Mapping Information
Human SNP ID rs6731302
Human chromosome chr2
Human SNP position 58606358
Pig chromosome chr3
Pig SNP position 87502268
2.Annotation Information
PubMed ID23563607
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23563607
StudyGenome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.
Disease/TraitObesity
Initial sample93,015 European ancestry overweight individuals, 32,858 European ancestry class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls
Replication sample65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls
Region2p16.1
Chromosome idchr2
Chromosome position58606358
Reported geneFANCL
Mapped geneLINC01122
Upstream gene id
Downstream gene id
SNP gene ids400955
Upstream gene distance
Downstream gene distance
SNP risk allelers6731302-A
SNPsrs6731302
Merged0
SNP id current6731302
Contextintron_variant
Intergenic0
Allele frequency0.44
P value0.000000002
Pvalue mlog8.69897000433601
P value text(Overweight)
Or beta1.04
%95 Ci[NR]
PlatformAffymetrix, Illumina [~ 2800000] (imputed)
CNVN
Mapped traitobesity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001073
Study accessionGCST001953