SNP Detail For rs6728021
1.Mapping Information
Human SNP ID rs6728021
Human chromosome chr2
Human SNP position 32896437
Pig chromosome chr3
Pig SNP position 113803712
2.Annotation Information
PubMed ID22610502
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22610502
StudyGenome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.
Disease/TraitImmune response to smallpox vaccine (IL-6)
Initial sampleUp to 512 European ancestry individuals, 199 African American individuals
Replication sampleNA
Region2p22.3
Chromosome idchr2
Chromosome position32896437
Reported geneLTBP1
Mapped geneLINC00486, LOC105374453
Upstream gene id
Downstream gene id
SNP gene ids285045, 105374453
Upstream gene distance
Downstream gene distance
SNP risk allelers6728021-G
SNPsrs6728021
Merged0
SNP id current6728021
Contextintron_variant
Intergenic0
Allele frequency
P value0.00000004
Pvalue mlog7.39794000867203
P value text(AA)
Or beta
%95 Ci
PlatformIllumina [NR]
CNVN
Mapped traitresponse to vaccine, cytokine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004645, http://www.ebi.ac.uk/efo/EFO_0004873
Study accessionGCST001532