SNP Detail For rs6725887
1.Mapping Information
Human SNP ID rs6725887
Human chromosome chr2
Human SNP position 202881162
Pig chromosome chr15
Pig SNP position 117835178
2.Annotation Information
PubMed ID19198609
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19198609
StudyGenome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants.
Disease/TraitMyocardial infarction (early onset)
Initial sample2,967 European ancestry cases, 3,075 European ancestry controls
Replication sample9,746 European ancestry cases, 9,746 European ancestry controls
Region2q33.2
Chromosome idchr2
Chromosome position202881162
Reported geneWDR12
Mapped geneWDR12
Upstream gene id
Downstream gene id
SNP gene ids55759
Upstream gene distance
Downstream gene distance
SNP risk allelers6725887-C
SNPsrs6725887
Merged0
SNP id current6725887
Contextintron_variant
Intergenic0
Allele frequency0.14
P value0.00000001
Pvalue mlog8
P value text
Or beta1.17
%95 Ci[1.11-1.23]
PlatformAffymetrix [~ 2500000] (imputed)
CNVN
Mapped traitmyocardial infarction
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000612
Study accessionGCST000340
PubMed ID21378990
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21378990
StudyLarge-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.
Disease/TraitCoronary heart disease
Initial sample22,233 European ancestry cases, 64,762 European ancestry controls
Replication sample56,682 European ancestry cases and controls
Region2q33.2
Chromosome idchr2
Chromosome position202881162
Reported geneWDR12
Mapped geneWDR12
Upstream gene id
Downstream gene id
SNP gene ids55759
Upstream gene distance
Downstream gene distance
SNP risk allelers6725887-C
SNPsrs6725887
Merged0
SNP id current6725887
Contextintron_variant
Intergenic0
Allele frequency0.15
P value0.000000001
Pvalue mlog9
P value text
Or beta1.14
%95 Ci[1.09-1.19]
PlatformAffymetrix, Illumina [~ 2300000] (imputed)
CNVN
Mapped traitcoronary heart disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001645
Study accessionGCST000998
PubMed ID24262325
JournalStroke
Linkwww.ncbi.nlm.nih.gov/pubmed/24262325
StudyShared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.
Disease/TraitCoronary artery disease
Initial sample33,398 cases, 75,726 controls
Replication sampleNA
Region2q33.2
Chromosome idchr2
Chromosome position202881162
Reported geneWDR12
Mapped geneWDR12
Upstream gene id
Downstream gene id
SNP gene ids55759
Upstream gene distance
Downstream gene distance
SNP risk allelers6725887-C
SNPsrs6725887
Merged0
SNP id current6725887
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta1.14
%95 Ci[1.10-1.19]
PlatformIllumina [575000] (imputed)
CNVN
Mapped traitcoronary heart disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001645
Study accessionGCST002289