Human SNP ID | rs672561 |
---|---|
Human chromosome | chr1 |
Human SNP position | 78521617 |
Pig chromosome | chr6 |
Pig SNP position | 124908475 |
PubMed ID | 23382691 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
Disease/Trait | IgG glycosylation |
Initial sample | 2,247 European ancestry individuals |
Replication sample | NA |
Region | 1p31.1 |
Chromosome id | chr1 |
Chromosome position | 78521617 |
Reported gene | NR |
Mapped gene | PTGFR |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5737 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs672561-C |
SNPs | rs672561 |
Merged | 0 |
SNP id current | 672561 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.257740490431687 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | (IGP8) |
Or beta | 0.1677 |
%95 Ci | [0.094-0.242] unit increase |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | serum IgG glycosylation measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
Study accession | GCST001848 |