SNP Detail For rs672561
1.Mapping Information
Human SNP ID rs672561
Human chromosome chr1
Human SNP position 78521617
Pig chromosome chr6
Pig SNP position 124908475
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region1p31.1
Chromosome idchr1
Chromosome position78521617
Reported geneNR
Mapped genePTGFR
Upstream gene id
Downstream gene id
SNP gene ids5737
Upstream gene distance
Downstream gene distance
SNP risk allelers672561-C
SNPsrs672561
Merged0
SNP id current672561
Contextintron_variant
Intergenic0
Allele frequency0.257740490431687
P value0.000009
Pvalue mlog5.04575749056067
P value text(IGP8)
Or beta0.1677
%95 Ci[0.094-0.242] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848