Human SNP ID | rs672203 |
---|---|
Human chromosome | chr1 |
Human SNP position | 70421416 |
Pig chromosome | chr6 |
Pig SNP position | 132040123 |
PubMed ID | 24025145 |
---|---|
Journal | Breast Cancer Res |
Link | www.ncbi.nlm.nih.gov/pubmed/24025145 |
Study | A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients. |
Disease/Trait | Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+doxorubicin+/-5FU) |
Initial sample | 64 Japanese ancestry cases, 27 Japanese ancestry controls |
Replication sample | NA |
Region | 1p31.1 |
Chromosome id | chr1 |
Chromosome position | 70421416 |
Reported gene | CTH |
Mapped gene | CTH |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 1491 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs672203-A |
SNPs | rs672203 |
Merged | 0 |
SNP id current | 672203 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.52 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (Dominant) |
Or beta | 5.33 |
%95 Ci | [2.59-11.0] |
Platform | Illumina [555600] |
CNV | N |
Mapped trait | response to cyclophosphamide, chemotherapy-induced alopecia, response to 5__ fluorouracil, response to doxorubicin |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_1902518, http://www.ebi.ac.uk/efo/EFO_0005400, http://purl.obolibrary.org/obo/GO_0036275, http://purl.obolibrary.org/obo/GO_1902520 |
Study accession | GCST002178 |