SNP Detail For rs672203
1.Mapping Information
Human SNP ID rs672203
Human chromosome chr1
Human SNP position 70421416
Pig chromosome chr6
Pig SNP position 132040123
2.Annotation Information
PubMed ID24025145
JournalBreast Cancer Res
Linkwww.ncbi.nlm.nih.gov/pubmed/24025145
StudyA genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.
Disease/TraitAdverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+doxorubicin+/-5FU)
Initial sample64 Japanese ancestry cases, 27 Japanese ancestry controls
Replication sampleNA
Region1p31.1
Chromosome idchr1
Chromosome position70421416
Reported geneCTH
Mapped geneCTH
Upstream gene id
Downstream gene id
SNP gene ids1491
Upstream gene distance
Downstream gene distance
SNP risk allelers672203-A
SNPsrs672203
Merged0
SNP id current672203
Contextintron_variant
Intergenic0
Allele frequency0.52
P value0.000002
Pvalue mlog5.69897000433601
P value text(Dominant)
Or beta5.33
%95 Ci[2.59-11.0]
PlatformIllumina [555600]
CNVN
Mapped traitresponse to cyclophosphamide, chemotherapy-induced alopecia, response to 5__ fluorouracil, response to doxorubicin
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_1902518, http://www.ebi.ac.uk/efo/EFO_0005400, http://purl.obolibrary.org/obo/GO_0036275, http://purl.obolibrary.org/obo/GO_1902520
Study accessionGCST002178