Human SNP ID | rs6720296 |
---|---|
Human chromosome | chr2 |
Human SNP position | 45181130 |
Pig chromosome | chr3 |
Pig SNP position | 101429598 |
PubMed ID | 25866641 |
---|---|
Journal | Biomark Res |
Link | www.ncbi.nlm.nih.gov/pubmed/25866641 |
Study | A genome wide association study on Newfoundland colorectal cancer patients__ survival outcomes. |
Disease/Trait | Survival in microsatellite instability low/stable colorectal cancer |
Initial sample | 431 European ancestry cases |
Replication sample | NA |
Region | 2p21 |
Chromosome id | chr2 |
Chromosome position | 45181130 |
Reported gene | LINC01121 |
Mapped gene | LINC01121 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 400952 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6720296-? |
SNPs | rs6720296 |
Merged | 0 |
SNP id current | 6720296 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (overall survival) |
Or beta | 1.74 |
%95 Ci | [1.38-2.19] |
Platform | Illumina [729737] |
CNV | N |
Mapped trait | colorectal cancer, microsatellite instability measurement, overall survival |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842, http://www.ebi.ac.uk/efo/EFO_0007054, http://www.ebi.ac.uk/efo/EFO_0000638 |
Study accession | GCST002820 |
PubMed ID | 25866641 |
Journal | Biomark Res |
Link | www.ncbi.nlm.nih.gov/pubmed/25866641 |
Study | A genome wide association study on Newfoundland colorectal cancer patients__ survival outcomes. |
Disease/Trait | Survival in microsatellite instability low/stable colorectal cancer |
Initial sample | 431 European ancestry cases |
Replication sample | NA |
Region | 2p21 |
Chromosome id | chr2 |
Chromosome position | 45181130 |
Reported gene | LINC01121 |
Mapped gene | LINC01121 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 400952 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6720296-? |
SNPs | rs6720296 |
Merged | 0 |
SNP id current | 6720296 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.0000005 |
Pvalue mlog | 6.30102999566398 |
P value text | (disease-free survival) |
Or beta | 1.74 |
%95 Ci | [1.40-2.16] |
Platform | Illumina [729737] |
CNV | N |
Mapped trait | disease free survival, colorectal cancer, microsatellite instability measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000409, http://www.ebi.ac.uk/efo/EFO_0005842, http://www.ebi.ac.uk/efo/EFO_0007054 |
Study accession | GCST002820 |