SNP Detail For rs6720296
1.Mapping Information
Human SNP ID rs6720296
Human chromosome chr2
Human SNP position 45181130
Pig chromosome chr3
Pig SNP position 101429598
2.Annotation Information
PubMed ID25866641
JournalBiomark Res
Linkwww.ncbi.nlm.nih.gov/pubmed/25866641
StudyA genome wide association study on Newfoundland colorectal cancer patients__ survival outcomes.
Disease/TraitSurvival in microsatellite instability low/stable colorectal cancer
Initial sample431 European ancestry cases
Replication sampleNA
Region2p21
Chromosome idchr2
Chromosome position45181130
Reported geneLINC01121
Mapped geneLINC01121
Upstream gene id
Downstream gene id
SNP gene ids400952
Upstream gene distance
Downstream gene distance
SNP risk allelers6720296-?
SNPsrs6720296
Merged0
SNP id current6720296
Contextintron_variant
Intergenic0
Allele frequency
P value0.000003
Pvalue mlog5.52287874528033
P value text(overall survival)
Or beta1.74
%95 Ci[1.38-2.19]
PlatformIllumina [729737]
CNVN
Mapped traitcolorectal cancer, microsatellite instability measurement, overall survival
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842, http://www.ebi.ac.uk/efo/EFO_0007054, http://www.ebi.ac.uk/efo/EFO_0000638
Study accessionGCST002820
PubMed ID25866641
JournalBiomark Res
Linkwww.ncbi.nlm.nih.gov/pubmed/25866641
StudyA genome wide association study on Newfoundland colorectal cancer patients__ survival outcomes.
Disease/TraitSurvival in microsatellite instability low/stable colorectal cancer
Initial sample431 European ancestry cases
Replication sampleNA
Region2p21
Chromosome idchr2
Chromosome position45181130
Reported geneLINC01121
Mapped geneLINC01121
Upstream gene id
Downstream gene id
SNP gene ids400952
Upstream gene distance
Downstream gene distance
SNP risk allelers6720296-?
SNPsrs6720296
Merged0
SNP id current6720296
Contextintron_variant
Intergenic0
Allele frequency
P value0.0000005
Pvalue mlog6.30102999566398
P value text(disease-free survival)
Or beta1.74
%95 Ci[1.40-2.16]
PlatformIllumina [729737]
CNVN
Mapped traitdisease free survival, colorectal cancer, microsatellite instability measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000409, http://www.ebi.ac.uk/efo/EFO_0005842, http://www.ebi.ac.uk/efo/EFO_0007054
Study accessionGCST002820