SNP Detail For rs6705628
1.Mapping Information
Human SNP ID rs6705628
Human chromosome chr2
Human SNP position 73981235
Pig chromosome chr3
Pig SNP position 72180698
2.Annotation Information
PubMed ID23273568
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23273568
StudyMeta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.
Disease/TraitSystemic lupus erythematosus
Initial sample1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls
Replication sample3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls
Region2p13.1
Chromosome idchr2
Chromosome position73981235
Reported geneDGUOK, TET3
Mapped geneDGUOK-AS1
Upstream gene id
Downstream gene id
SNP gene ids100874048
Upstream gene distance
Downstream gene distance
SNP risk allelers6705628-C
SNPsrs6705628
Merged0
SNP id current6705628
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.78
P value0.00000000000000007
Pvalue mlog16.1549019599857
P value text
Or beta1.3333
%95 Ci
PlatformIllumina [2100739] (imputed)
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST001795