SNP Detail For rs6703865
1.Mapping Information
Human SNP ID rs6703865
Human chromosome chr1
Human SNP position 169581725
Pig chromosome chr4
Pig SNP position 89033658
2.Annotation Information
PubMed ID22745009
JournalAnn Neurol
Linkwww.ncbi.nlm.nih.gov/pubmed/22745009
StudyMultiple loci influencing hippocampal degeneration identified by genome scan.
Disease/TraitHippocampal atrophy
Initial sample1149 European ancestry Alzheimer disease cases, 336 European ancestry individuals with mild cognitive impairment, 188 European ancestry controls
Replication sample419 African American Alzheimer disease cases
Region1q24.2
Chromosome idchr1
Chromosome position169581725
Reported geneSELP, F5
Mapped geneF5
Upstream gene id
Downstream gene id
SNP gene ids2153
Upstream gene distance
Downstream gene distance
SNP risk allelers6703865-A
SNPsrs6703865
Merged0
SNP id current6703865
Contextintron_variant
Intergenic0
Allele frequency0.08
P value0.000000001
Pvalue mlog9
P value text(Hippocampal volume)
Or beta
%95 Ci
PlatformIllumina [2131250] (imputed)
CNVN
Mapped traithippocampal atrophy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005039
Study accessionGCST001530