Human SNP ID | rs6703865 |
---|---|
Human chromosome | chr1 |
Human SNP position | 169581725 |
Pig chromosome | chr4 |
Pig SNP position | 89033658 |
PubMed ID | 22745009 |
---|---|
Journal | Ann Neurol |
Link | www.ncbi.nlm.nih.gov/pubmed/22745009 |
Study | Multiple loci influencing hippocampal degeneration identified by genome scan. |
Disease/Trait | Hippocampal atrophy |
Initial sample | 1149 European ancestry Alzheimer disease cases, 336 European ancestry individuals with mild cognitive impairment, 188 European ancestry controls |
Replication sample | 419 African American Alzheimer disease cases |
Region | 1q24.2 |
Chromosome id | chr1 |
Chromosome position | 169581725 |
Reported gene | SELP, F5 |
Mapped gene | F5 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 2153 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6703865-A |
SNPs | rs6703865 |
Merged | 0 |
SNP id current | 6703865 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.08 |
P value | 0.000000001 |
Pvalue mlog | 9 |
P value text | (Hippocampal volume) |
Or beta | |
%95 Ci | |
Platform | Illumina [2131250] (imputed) |
CNV | N |
Mapped trait | hippocampal atrophy |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005039 |
Study accession | GCST001530 |