Human SNP ID | rs6699417 |
---|---|
Human chromosome | chr1 |
Human SNP position | 88657760 |
Pig chromosome | chr4 |
Pig SNP position | 139963262 |
PubMed ID | 20881960 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/20881960 |
Study | Hundreds of variants clustered in genomic loci and biological pathways affect human height. |
Disease/Trait | Height |
Initial sample | 133,653 European ancestry individuals |
Replication sample | 50,074 European ancestry individuals |
Region | 1p22.2 |
Chromosome id | chr1 |
Chromosome position | 88657760 |
Reported gene | PKN2 |
Mapped gene | PKN2-AS1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101927891 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6699417-T |
SNPs | rs6699417 |
Merged | 0 |
SNP id current | 6699417 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.61 |
P value | 0.000000005 |
Pvalue mlog | 8.30102999566398 |
P value text | |
Or beta | 0.021 |
%95 Ci | [NR] unit increase |
Platform | Affymetrix, Illumina [2834208] (imputed) |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST000817 |