SNP Detail For rs6699417
1.Mapping Information
Human SNP ID rs6699417
Human chromosome chr1
Human SNP position 88657760
Pig chromosome chr4
Pig SNP position 139963262
2.Annotation Information
PubMed ID20881960
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/20881960
StudyHundreds of variants clustered in genomic loci and biological pathways affect human height.
Disease/TraitHeight
Initial sample133,653 European ancestry individuals
Replication sample50,074 European ancestry individuals
Region1p22.2
Chromosome idchr1
Chromosome position88657760
Reported genePKN2
Mapped genePKN2-AS1
Upstream gene id
Downstream gene id
SNP gene ids101927891
Upstream gene distance
Downstream gene distance
SNP risk allelers6699417-T
SNPsrs6699417
Merged0
SNP id current6699417
Contextintron_variant
Intergenic0
Allele frequency0.61
P value0.000000005
Pvalue mlog8.30102999566398
P value text
Or beta0.021
%95 Ci[NR] unit increase
PlatformAffymetrix, Illumina [2834208] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000817