SNP Detail For rs6698365
1.Mapping Information
Human SNP ID rs6698365
Human chromosome chr1
Human SNP position 24171333
Pig chromosome JH118535-1
Pig SNP position 33577
2.Annotation Information
PubMed ID21844884
JournalPharmacogenomics J
Linkwww.ncbi.nlm.nih.gov/pubmed/21844884
StudyGenome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations
Disease/TraitResponse to platinum-based chemotherapy (cisplatin)
Initial sample176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines
Replication sampleNA
Region1p36.11
Chromosome idchr1
Chromosome position24171333
Reported geneIL28RA
Mapped geneIFNLR1
Upstream gene id
Downstream gene id
SNP gene ids163702
Upstream gene distance
Downstream gene distance
SNP risk allelers6698365-?
SNPsrs6698365
Merged0
SNP id current6698365
Contextintron_variant
Intergenic0
Allele frequency
P value0.000001
Pvalue mlog6
P value text
Or beta
%95 Ci
PlatformNR [~ 3000000] (imputed)
CNVN
Mapped traitresponse to cisplatin
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0072718
Study accessionGCST001201