SNP Detail For rs6689306
1.Mapping Information
Human SNP ID rs6689306
Human chromosome chr1
Human SNP position 154423470
Pig chromosome chr4
Pig SNP position 104219631
2.Annotation Information
PubMed ID26343387
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26343387
StudyA comprehensive 1000 Genomes-based genome-wide association meta-analysis of coronary artery disease.
Disease/TraitCoronary artery disease
Initial sample42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls,
Replication sampleNA
Region1q21.3
Chromosome idchr1
Chromosome position154423470
Reported geneIL6R
Mapped geneIL6R
Upstream gene id
Downstream gene id
SNP gene ids3570
Upstream gene distance
Downstream gene distance
SNP risk allelers6689306-A
SNPsrs6689306
Merged
SNP id current6689306
Contextintron_variant
Intergenic0
Allele frequency0.447545
P value0.000000003
Pvalue mlog8.52287874528033
P value text
Or beta1.06
%95 Ci[1.04- 1.08]
PlatformAffymetrix, Illumina [8600000] (imputed)
CNVN
Mapped traitcoronary artery disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000378
Study accessionGCST003116