Human SNP ID | rs6688272 |
---|---|
Human chromosome | chr1 |
Human SNP position | 196715262 |
Pig chromosome | chr10 |
Pig SNP position | 24387150 |
PubMed ID | 26634245 |
---|---|
Journal | BMC Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26634245 |
Study | A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry. |
Disease/Trait | Post bronchodilator FEV1/FVC ratio in COPD |
Initial sample | 5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases |
Replication sample | NA |
Region | 1q31.3 |
Chromosome id | chr1 |
Chromosome position | 196715262 |
Reported gene | CFH |
Mapped gene | CFH |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3075 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6688272-T |
SNPs | rs6688272 |
Merged | 0 |
SNP id current | 6688272 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.4 |
P value | 0.0000009 |
Pvalue mlog | 6.04575749056067 |
P value text | |
Or beta | 0.012 |
%95 Ci | NR unit increase |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | response to bronchodilator, chronic obstructive pulmonary disease, FEV/FEC ratio |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0004713 |
Study accession | GCST003265 |