SNP Detail For rs6688272
1.Mapping Information
Human SNP ID rs6688272
Human chromosome chr1
Human SNP position 196715262
Pig chromosome chr10
Pig SNP position 24387150
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio in COPD
Initial sample5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases
Replication sampleNA
Region1q31.3
Chromosome idchr1
Chromosome position196715262
Reported geneCFH
Mapped geneCFH
Upstream gene id
Downstream gene id
SNP gene ids3075
Upstream gene distance
Downstream gene distance
SNP risk allelers6688272-T
SNPsrs6688272
Merged0
SNP id current6688272
Contextintron_variant
Intergenic0
Allele frequency0.4
P value0.0000009
Pvalue mlog6.04575749056067
P value text
Or beta0.012
%95 CiNR unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, chronic obstructive pulmonary disease, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003265