SNP Detail For rs6683419
1.Mapping Information
Human SNP ID rs6683419
Human chromosome chr1
Human SNP position 19501286
Pig chromosome chr6
Pig SNP position 71998151
2.Annotation Information
PubMed ID24852370
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24852370
StudyGenome-wide association study identifies a novel susceptibility gene for serum TSH levels in Chinese populations.
Disease/TraitSerum thyroid-stimulating hormone levels
Initial sample1,346 Han Chinese ancestry individuals
Replication sample3,235 She Chinese ancestry individuals
Region1p36.13
Chromosome idchr1
Chromosome position19501286
Reported geneMINOS1, NBL1, CAPZB
Mapped geneLOC105376819
Upstream gene id
Downstream gene id
SNP gene ids105376819
Upstream gene distance
Downstream gene distance
SNP risk allelers6683419-G
SNPsrs6683419
Merged0
SNP id current6683419
Contextintergenic_variant
Intergenic0
Allele frequency0.265
P value0.0000003
Pvalue mlog6.52287874528033
P value text
Or beta0.027
%95 Ci[NR] unit increase
PlatformIllumina [8503852] (imputed)
CNVN
Mapped traitthyroid stimulating hormone measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004748
Study accessionGCST002458