SNP Detail For rs6680582
1.Mapping Information
Human SNP ID rs6680582
Human chromosome chr1
Human SNP position 205489035
Pig chromosome chr9
Pig SNP position 72417714
2.Annotation Information
PubMed ID24823311
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24823311
StudyGenome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.
Disease/TraitPlasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)
Initial sample8,631 European ancestry individuals
Replication sampleNA
Region1q32.1
Chromosome idchr1
Chromosome position205489035
Reported genePCTK3
Mapped geneTRK-TTT8-1 - CDK18
Upstream gene id100189098
Downstream gene id5129
SNP gene ids
Upstream gene distance14820
Downstream gene distance15521
SNP risk allelers6680582-A
SNPsrs6680582
Merged0
SNP id current6680582
Contextintergenic_variant
Intergenic1
Allele frequency0.072
P value0.0000005
Pvalue mlog6.30102999566398
P value text
Or beta0.01
%95 Ci[NR] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitomega-6 polyunsaturated fatty acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005680
Study accessionGCST002450