Human SNP ID | rs6680582 |
---|---|
Human chromosome | chr1 |
Human SNP position | 205489035 |
Pig chromosome | chr9 |
Pig SNP position | 72417714 |
PubMed ID | 24823311 |
---|---|
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24823311 |
Study | Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium. |
Disease/Trait | Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid) |
Initial sample | 8,631 European ancestry individuals |
Replication sample | NA |
Region | 1q32.1 |
Chromosome id | chr1 |
Chromosome position | 205489035 |
Reported gene | PCTK3 |
Mapped gene | TRK-TTT8-1 - CDK18 |
Upstream gene id | 100189098 |
Downstream gene id | 5129 |
SNP gene ids | |
Upstream gene distance | 14820 |
Downstream gene distance | 15521 |
SNP risk allele | rs6680582-A |
SNPs | rs6680582 |
Merged | 0 |
SNP id current | 6680582 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.072 |
P value | 0.0000005 |
Pvalue mlog | 6.30102999566398 |
P value text | |
Or beta | 0.01 |
%95 Ci | [NR] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | omega-6 polyunsaturated fatty acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005680 |
Study accession | GCST002450 |