SNP Detail For rs6679356
1.Mapping Information
Human SNP ID rs6679356
Human chromosome chr1
Human SNP position 67354511
Pig chromosome chr6
Pig SNP position 134123723
2.Annotation Information
PubMed ID26394269
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/26394269
StudyInternational genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.
Disease/TraitPrimary biliary cirrhosis
Initial sample2,764 European ancestry cases, 10,475 European ancestry controls
Replication sample3,716 European ancestry cases, 4,261 European ancestry controls
Region1p31.3
Chromosome idchr1
Chromosome position67354511
Reported geneIL12RB2, SERBP1
Mapped geneIL12RB2
Upstream gene id
Downstream gene id
SNP gene ids3595
Upstream gene distance
Downstream gene distance
SNP risk allelers6679356-C
SNPsrs6679356
Merged
SNP id current6679356
Contextintron_variant
Intergenic0
Allele frequency0.21
P value7E-28
Pvalue mlog27.1549019599857
P value text
Or beta1.52
%95 CiNR
PlatformIllumina [1143634] (imputed)
CNVN
Mapped traitprimary biliary cirrhosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_1001486
Study accessionGCST003129