Human SNP ID | rs6679356 |
---|---|
Human chromosome | chr1 |
Human SNP position | 67354511 |
Pig chromosome | chr6 |
Pig SNP position | 134123723 |
PubMed ID | 26394269 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26394269 |
Study | International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways. |
Disease/Trait | Primary biliary cirrhosis |
Initial sample | 2,764 European ancestry cases, 10,475 European ancestry controls |
Replication sample | 3,716 European ancestry cases, 4,261 European ancestry controls |
Region | 1p31.3 |
Chromosome id | chr1 |
Chromosome position | 67354511 |
Reported gene | IL12RB2, SERBP1 |
Mapped gene | IL12RB2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3595 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6679356-C |
SNPs | rs6679356 |
Merged | |
SNP id current | 6679356 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.21 |
P value | 7E-28 |
Pvalue mlog | 27.1549019599857 |
P value text | |
Or beta | 1.52 |
%95 Ci | NR |
Platform | Illumina [1143634] (imputed) |
CNV | N |
Mapped trait | primary biliary cirrhosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_1001486 |
Study accession | GCST003129 |