SNP Detail For rs6676535
1.Mapping Information
Human SNP ID rs6676535
Human chromosome chr1
Human SNP position 238916009
Pig chromosome chr14
Pig SNP position 56541469
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio in COPD
Initial sample5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases
Replication sampleNA
Region1q43
Chromosome idchr1
Chromosome position238916009
Reported geneIntergenic
Mapped geneLOC105373222 - RPL39P10
Upstream gene id105373222
Downstream gene id100129952
SNP gene ids
Upstream gene distance67950
Downstream gene distance136562
SNP risk allelers6676535-A
SNPsrs6676535
Merged0
SNP id current6676535
Contextintergenic_variant
Intergenic1
Allele frequency0.015
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta0.046
%95 CiNR unit decrease
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, chronic obstructive pulmonary disease, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003265