Human SNP ID | rs6676535 |
---|---|
Human chromosome | chr1 |
Human SNP position | 238916009 |
Pig chromosome | chr14 |
Pig SNP position | 56541469 |
PubMed ID | 26634245 |
---|---|
Journal | BMC Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26634245 |
Study | A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry. |
Disease/Trait | Post bronchodilator FEV1/FVC ratio in COPD |
Initial sample | 5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases |
Replication sample | NA |
Region | 1q43 |
Chromosome id | chr1 |
Chromosome position | 238916009 |
Reported gene | Intergenic |
Mapped gene | LOC105373222 - RPL39P10 |
Upstream gene id | 105373222 |
Downstream gene id | 100129952 |
SNP gene ids | |
Upstream gene distance | 67950 |
Downstream gene distance | 136562 |
SNP risk allele | rs6676535-A |
SNPs | rs6676535 |
Merged | 0 |
SNP id current | 6676535 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.015 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 0.046 |
%95 Ci | NR unit decrease |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | response to bronchodilator, chronic obstructive pulmonary disease, FEV/FEC ratio |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0004713 |
Study accession | GCST003265 |