Human SNP ID | rs6675668 |
---|---|
Human chromosome | chr1 |
Human SNP position | 95050081 |
Pig chromosome | chr4 |
Pig SNP position | 134105381 |
PubMed ID | 23362303 |
---|---|
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23362303 |
Study | Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortiu |
Disease/Trait | Stearic acid (18:0) plasma levels |
Initial sample | 8,961 European ancestry individuals |
Replication sample | |
Region | 1p21.3 |
Chromosome id | chr1 |
Chromosome position | 95050081 |
Reported gene | TMEM56, ALG14 |
Mapped gene | ALG14 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 199857 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6675668-T |
SNPs | rs6675668 |
Merged | 0 |
SNP id current | 6675668 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.49 |
P value | 0.000000000000000002 |
Pvalue mlog | 17.698970004336 |
P value text | |
Or beta | 0.1651 |
%95 Ci | [0.128-0.202] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | phospholipid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004639 |
Study accession | GCST001840 |