SNP Detail For rs6675668
1.Mapping Information
Human SNP ID rs6675668
Human chromosome chr1
Human SNP position 95050081
Pig chromosome chr4
Pig SNP position 134105381
2.Annotation Information
PubMed ID23362303
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23362303
StudyGenome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortiu
Disease/TraitStearic acid (18:0) plasma levels
Initial sample8,961 European ancestry individuals
Replication sample
Region1p21.3
Chromosome idchr1
Chromosome position95050081
Reported geneTMEM56, ALG14
Mapped geneALG14
Upstream gene id
Downstream gene id
SNP gene ids199857
Upstream gene distance
Downstream gene distance
SNP risk allelers6675668-T
SNPsrs6675668
Merged0
SNP id current6675668
Contextintron_variant
Intergenic0
Allele frequency0.49
P value0.000000000000000002
Pvalue mlog17.698970004336
P value text
Or beta0.1651
%95 Ci[0.128-0.202] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitphospholipid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004639
Study accessionGCST001840