SNP Detail For rs6670165
1.Mapping Information
Human SNP ID rs6670165
Human chromosome chr1
Human SNP position 177310985
Pig chromosome chr9
Pig SNP position 130845700
2.Annotation Information
PubMed ID25056061
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25056061
StudyBiological insights from 108 schizophrenia-associated genetic loci.
Disease/TraitSchizophrenia
Initial sample32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls
Replication sample1,513 European ancestry cases, 66,236 European ancestry controls
Region1q25.2
Chromosome idchr1
Chromosome position177310985
Reported geneFAM5B
Mapped geneBRINP2 - LOC102724661
Upstream gene id57795
Downstream gene id102724661
SNP gene ids
Upstream gene distance28563
Downstream gene distance40601
SNP risk allelers6670165-T
SNPsrs6670165
Merged0
SNP id current6670165
Contextintergenic_variant
Intergenic1
Allele frequency0.184
P value0.00000004
Pvalue mlog7.39794000867203
P value text
Or beta1.075
%95 Ci[1.047-1.103]
PlatformAffymetrix, Illumina [9005918] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST002539
PubMed ID26198764
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26198764
StudyGenome-wide association study of schizophrenia in Ashkenazi Jews.
Disease/TraitSchizophrenia
Initial sample592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls
Replication sampleNA
Region1q25.2
Chromosome idchr1
Chromosome position177310985
Reported geneNR
Mapped geneBRINP2 - LOC102724661
Upstream gene id57795
Downstream gene id102724661
SNP gene ids
Upstream gene distance28563
Downstream gene distance40601
SNP risk allelers6670165-T
SNPsrs6670165
Merged0
SNP id current6670165
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.00000005
Pvalue mlog7.30102999566398
P value text
Or beta1.08
%95 Ci[NR]
PlatformIllumina [7158791] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST003048