SNP Detail For rs6665019
1.Mapping Information
Human SNP ID rs6665019
Human chromosome chr1
Human SNP position 25001518
Pig chromosome chr6
Pig SNP position 76362692
2.Annotation Information
PubMed ID25188341
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25188341
StudyGenome-Wide Association Meta-analysis of Neuropathologic Features of Alzheimer__s Disease and Related Dementias.
Disease/TraitDementia and core Alzheimer__s disease neuropathologic changes
Initial sampleup to 3,887 cases, up to 1,027 controls
Replication sampleNA
Region1p36.11
Chromosome idchr1
Chromosome position25001518
Reported geneintergenic
Mapped geneRUNX3 - MIR4425
Upstream gene id864
Downstream gene id100616365
SNP gene ids
Upstream gene distance36361
Downstream gene distance21985
SNP risk allelers6665019-A
SNPsrs6665019
Merged0
SNP id current6665019
Contextregulatory_region_variant
Intergenic1
Allele frequency0.1211
P value0.000005
Pvalue mlog5.30102999566398
P value text(Complete)
Or beta0.5008
%95 Ci[0.29-0.72] unit decrease
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitdementia, Alzheimer__s disease neuropathologic change
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003862, http://www.ebi.ac.uk/efo/EFO_0006801
Study accessionGCST002593