Human SNP ID | rs6659742 |
---|---|
Human chromosome | chr1 |
Human SNP position | 159848723 |
Pig chromosome | chr4 |
Pig SNP position | 98649383 |
PubMed ID | 23472185 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/23472185 |
Study | Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles. |
Disease/Trait | Multiple sclerosis (OCB status) |
Initial sample | 1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls |
Replication sample | NA |
Region | 1q23.2 |
Chromosome id | chr1 |
Chromosome position | 159848723 |
Reported gene | C10ORF204 |
Mapped gene | LOC105373478, C1orf204 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105373478, 284677 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6659742-? |
SNPs | rs6659742 |
Merged | 0 |
SNP id current | 6659742 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000007 |
Pvalue mlog | 6.15490195998574 |
P value text | (OCB negative vs. controls) |
Or beta | 1.99 |
%95 Ci | [1.52-2.61] |
Platform | Illumina [495970] |
CNV | N |
Mapped trait | multiple sclerosis, oligoclonal band measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003885, http://www.ebi.ac.uk/efo/EFO_0005206 |
Study accession | GCST001892 |