SNP Detail For rs6659742
1.Mapping Information
Human SNP ID rs6659742
Human chromosome chr1
Human SNP position 159848723
Pig chromosome chr4
Pig SNP position 98649383
2.Annotation Information
PubMed ID23472185
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23472185
StudyOligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.
Disease/TraitMultiple sclerosis (OCB status)
Initial sample1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls
Replication sampleNA
Region1q23.2
Chromosome idchr1
Chromosome position159848723
Reported geneC10ORF204
Mapped geneLOC105373478, C1orf204
Upstream gene id
Downstream gene id
SNP gene ids105373478, 284677
Upstream gene distance
Downstream gene distance
SNP risk allelers6659742-?
SNPsrs6659742
Merged0
SNP id current6659742
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000007
Pvalue mlog6.15490195998574
P value text(OCB negative vs. controls)
Or beta1.99
%95 Ci[1.52-2.61]
PlatformIllumina [495970]
CNVN
Mapped traitmultiple sclerosis, oligoclonal band measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003885, http://www.ebi.ac.uk/efo/EFO_0005206
Study accessionGCST001892