SNP Detail For rs664461
1.Mapping Information
Human SNP ID rs664461
Human chromosome chr9
Human SNP position 27152310
Pig chromosome chr1
Pig SNP position 218412546
2.Annotation Information
PubMed ID25646338
JournalAm J Clin Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/25646338
StudyGenetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.
Disease/TraitTrans fatty acid levels
Initial sample8,013 European ancestry individuals
Replication sample1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals
Region9p21.2
Chromosome idchr9
Chromosome position27152310
Reported geneNR
Mapped geneTEK
Upstream gene id
Downstream gene id
SNP gene ids7010
Upstream gene distance
Downstream gene distance
SNP risk allelers664461-T
SNPsrs664461
Merged0
SNP id current664461
Contextintron_variant
Intergenic0
Allele frequency0.5749
P value0.000002
Pvalue mlog5.69897000433601
P value text(Trans-16:1n-7, EA)
Or beta0.0024
%95 Ci[0.0014-0.0034] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traittrans fatty acid measurement, trans-16:1n-7 fatty acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006821, http://www.ebi.ac.uk/efo/EFO_0006822
Study accessionGCST002721