Human SNP ID | rs664461 |
---|---|
Human chromosome | chr9 |
Human SNP position | 27152310 |
Pig chromosome | chr1 |
Pig SNP position | 218412546 |
PubMed ID | 25646338 |
---|---|
Journal | Am J Clin Nutr |
Link | www.ncbi.nlm.nih.gov/pubmed/25646338 |
Study | Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium. |
Disease/Trait | Trans fatty acid levels |
Initial sample | 8,013 European ancestry individuals |
Replication sample | 1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals |
Region | 9p21.2 |
Chromosome id | chr9 |
Chromosome position | 27152310 |
Reported gene | NR |
Mapped gene | TEK |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 7010 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs664461-T |
SNPs | rs664461 |
Merged | 0 |
SNP id current | 664461 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.5749 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (Trans-16:1n-7, EA) |
Or beta | 0.0024 |
%95 Ci | [0.0014-0.0034] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | trans fatty acid measurement, trans-16:1n-7 fatty acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006821, http://www.ebi.ac.uk/efo/EFO_0006822 |
Study accession | GCST002721 |