SNP Detail For rs664154
1.Mapping Information
Human SNP ID rs664154
Human chromosome chr6
Human SNP position 18991328
Pig chromosome chr7
Pig SNP position 15523819
2.Annotation Information
PubMed ID25869804
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/25869804
StudyGWAS for executive function and processing speed suggests involvement of the CADM2 gene.
Disease/TraitInformation processing speed
Initial sampleUp to 30,807 European ancestry individuals, up to 1,267 Erasmus Rucphen Family individuals, up to 535 Korkulan individuals, up to 417 Orcadian individuals, up to 311 Vis individuals
Replication sampleUp to 8,436 European ancestry individuals, up to 1,444 African American individuals
Region6p22.3
Chromosome idchr6
Chromosome position18991328
Reported geneRP1-239K6.1
Mapped geneLOC105374958
Upstream gene id
Downstream gene id
SNP gene ids105374958
Upstream gene distance
Downstream gene distance
SNP risk allelers664154-A
SNPsrs664154
Merged0
SNP id current664154
Contextintergenic_variant
Intergenic0
Allele frequency0.24
P value0.0000005
Pvalue mlog6.30102999566398
P value text(LDST/DSST - age and sex adjusted)
Or beta5.03
%95 Ci[NR] unit increase
PlatformAffymetrix, Illumina [up to 2357391] (imputed)
CNVN
Mapped traitinformation processing speed
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004363
Study accessionGCST002850